Publications

with data from Alphalyse

Looking for references?

Over the last 10 years our customers have published hundreds of papers in peer-reviewed journals and patent applications with data from our laboratory.

Below you will find a number of papers to get an idea of how our services have been applied as part of leading edge protein research.

Protein Identification

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Karina Krotova, George W Marek, Rejean L. Wang, George Aslanidi, Brad E Hoffman, Nazli Khodayari, Farshid N Rouhani, and Mark L Brantly
Alpha1-antitrypsin–deficient Macrophages Have Increased Matriptase-mediated Proteolytic Activity
American Journal of Respiratory Cell and Molecular Biology, March 2017
Magda E. Alvarado, Claudia Rubiano, Eliana Calvo, Vanessa Gómez, Moisés Wasserman
Experimental and bioinformatic characterization of CaBP2933 an EF-Hand protein of Giardia intestinalis
Molecular and Biochemical Parasitology, March 2017
Martina Bielaszewska, Christian Rüter, Andreas Bauwens, Lilo Greune, Kevin-André Jarosch, Daniel Steil, Wenlan Zhang, Xiaohua He, Roland Lloubes, Angelika Fruth, Kwang Sik Kim, M. Alexander Schmidt, Ulrich Dobrindt, Alexander Mellmann, Helge Karch
Host cell interactions of outer membrane vesicle-associated virulence factors of enterohemorrhagic Escherichia coli O157: Intracellular delivery, trafficking and mechanisms of cell injury
PLOS Pathogens, February 2017
Isabella M. Y. Zanini, Charlotte Soneson, Luca E. Lorenzi, Claus M. Azzalin
Human Cactin interacts with DHX8 and SRRM2 to assure efficient pre-mRNA splicing and sister chromatid cohesion
J Cell Sci doi: 10.1242/jcs.194068, December 2016
K Sampson, Jelena Zaitseva, Maria Stauffer, Brian Vande Berg, Rong Guo, Daniel Tomso, Brian McNulty, Nalini Desai, Deepa Balasubramanian
Discovery of a novel insecticidal protein from Chromobacterium piscinae, with activity against Western Corn Rootworm, Diabrotica virgifera virgifera
Journal of Invertebrate Pathology, October 2016
Marit Reitsma, Shanna Bastiaan-Net, Stefano Sforza, Johanna P. M. van der Valk, Roy van Gerth van Wijk, Huub F. J. Savelkoul, Nicolette W. de Jong, and Harry J. Wichers
Purification and Characterization of Anacardium occidentale (Cashew) Allergens Ana o 1, Ana o 2, and Ana o 3
J. Agric. Food Chem., 2016, 64 (5), pp 1191–1201
Jennifer K. Ness, Amanda A. Skiles, Eng-Hui Yap, Eduardo J. Fajardo, Andras Fiser and Nikos Tapinos
Nuc-ErbB3 regulates H3K27me3 levels and HMT activity to establish epigenetic repression during peripheral myelination
FPO IP Research and Communities, March 2016
Sarah van Broekhovena, Shanna Bastiaan-Netb, Nicolette W. de Jongc, Harry J. Wichersb
Influence of processing and in vitro digestion on the allergic cross-reactivity of three mealworm species
Food Chemistry Volume 196, Pages 1075–1083, April 2016
Stine N. Clemmensen, Anders J. Glenthøj, Sara Heebøll, Hans Jørgen Nielsen, Claus Koch, Niels Borregaard
Plasma levels of OLFM4 in normals and patients with gastrointestinal cancer
Journal of Cellular and Molecular Medicine Volume 19, Issue 12, pages 2865–2873, December 2015
Lisa Kunsmann, Christian Rüter, Andreas Bauwens, Lilo Greune, Malte Glüder, Björn Kemper, Angelika Fruth, Sun Nyunt Wai, Xiaohua He, Roland Lloubes, M. Alexander Schmidt, Ulrich Dobrindt, Alexander Mellmann, Helge Karch & Martina Bielaszewska
Virulence from vesicles: Novel mechanisms of host cell injury by Escherichia coli O104:H4 outbreak strain
Scientific Reports 5, Article number: 13252 , August 2015
Lindert Benedictus, Rutger D. Luteijn, Henny Otten, Robert Jan Lebbink, Peter J. S. van Kooten, Emmanuel J. H. J. Wiertz, Victor P. M. G. Rutten & Ad P. Koets
Pathogenicity of Bovine Neonatal Pancytopenia-associated vaccine-induced alloantibodies correlates with Major Histocompatibility Complex class I expression
Scientific Reports 5, Article number: 12748 , August 2015
BMC Microbiology 201515:138, July 2015
Disease Models and Mechanisms 8: 877-890, May 2015
Oriana Flores, Jennifer Alcaíno, María Fernandez-Lobato, Víctor Cifuentes, Marcelo Baeza
Characterization of virus-like particles and identification of capsid proteins in Xanthophyllomyces dendrorhous
Virus Genes Volume 50, Issue 2, pp 253-259, April 2015
Rohit Ruhala, Henrik Anttia, Olena Rzhepishevskaa, Nicolas Boulangerb, David R. Barberob, Sun Nyunt Waic, Bernt Eric Uhlinc, Madeleine Ramstedt
A multivariate approach to correlate bacterial surface properties to biofilm formation by lipopolysaccharide mutants of Pseudomonas aeruginosa
Colloids and Surfaces B: Biointerfaces Volume 127, Pages 182–191, March 2015
Nucleic Acids Research, February 2015
The Journal of Biological Chemistry, 289, 34601-34619. , December 2014
Tianyan Song, Dharmesh Sabharwal, Jyoti Mohan Gurung, Andrew T. Cheng, Annika E. Sjöström, Fitnat H. Yildiz, Bernt Eric Uhlin, Sun Nyunt Wai
Vibrio cholerae Utilizes Direct sRNA Regulation in Expression of a Biofilm Matrix Protein
PLOS one, July 2014
Nucleid Acids Research, July 2014
Free Radical Research Volume 47, Issue 6-7, May 2013
Alireza Shahriary, Hossein Mehrani, Mostafa Ghaneim, Shahram Parvin
Comparative proteome analysis of peripheral neutrophils from sulfur mustard-exposed and COPD patients
Journal of Immunotoxicology, May 2014
Ji-Young Kim, Taraswi Banerjee, Aurimas Vinckevicius, Qianyi Luo, J. Brandon Parker, Mairead R. Baker, Ishwar Radhakrishnan, Jian-Jun Wei, Grant D. Barish, Debabrata Chakravarti
A Role for WDR5 in Integrating 11 Phosphorylation to Lysine 4 Methylation on Histone H3 during Androgen Signaling and in Prostate Cancer
Molecular Cell, May 2014
Julia Garbe, Jonathan Sjögren, Eoin F. J. Cosgrave, Weston B. Struwe, Marta Bober, Anders I. Olin, Pauline M. Rudd, Mattias Collin
EndoE from Enterococcus faecalis Hydrolyzes the Glycans of the Biofilm Inhibiting Protein Lactoferrin and Mediates Growth
PLoS ONE, March 2014
Anil Koul, Luc Vranckx, Neeraj Dhar, Hinrich W.H. Göhlmann, Emre Özdemir, Jean-Marc Neefs, Melanie Schulz, Ping Lu, Ejvind Mørtz, John D. McKinney, Koen Andries & Dirk Bald
Delayed bactericidal response of Mycobacterium tuberculosis to bedaquiline involves remodelling of bacterial metabolism
Nature Communications, February 2014
Alireza Shahriary, Hossein Mehrani, Mostafa Ghaneim, Shahram Parvin
Comparative proteome analysis of peripheral neutrophils from sulfur mustard-exposed and COPD patients
Journal of Immunotoxicology, May 2014
Hongbing Jiang, Carl J. Franza, Guang Wu, Hilary Renshawa Guoyan Zhao, Andrew E. Firth, David Wang
Orsay virus utilizes ribosomal frameshifting to express a novel protein that is incorporated into virions
Virology, February 2014, Vol. 450–451, pp. 213–221
Susanne Erdmann, Sven Le Moine Bauer, Roger A. Garrett
Inter-viral conflicts that exploit host CRISPR immune systems of Sulfolobus
Molecular Biology, December 2013
Susanne Erdmann, Bo Chen, Xiaoxing Huang, Ling Deng, Chao Liu, Shiraz A. Shah, Sven Le Moine Bauer, Carlos León Sobrino, Haina Wang, Yunlin Wei, Qunxin She, Roger A. Garrett, Li Huang, Lianbing Lin
A novel single-tailed fusiform Sulfolobus virus STSV2 infecting model Sulfolobus species
Extremophiles, October 2013, Vol. 18, Issue 1, pp. 51-60
Tobias Kromann-Hansen, Ida K. Lund, Zhuo Liu, Peter A. Andreasen, Gunilla Høyer-Hansen, and Hans Peter Sørensen
Allosteric Inactivation of a Trypsin-Like Serine Protease by An Antibody Binding to the 37- and 70-Loops
ACS Publications Biochemistry, 2013
Informa Healthcare, July 2013, Vol. 47, No. 6-7, pp. 541-550
Christian Q. Scheckhuber, Marten Veenhuis, Ida J. van der Klei
Improving penicillin biosynthesis in Penicillium chrysogenum by glyoxalase overproduction
Metabolic Engineering, July 2013, Vol. 18, pp. 36–43
ThermoFisher Scientific, May 2013
Shaojun Yang, Yi-Hua Jan, Joshua P. Gray, Vladimir Mishin, Diane E. Heck, Debra L. Laskin and Jeffrey D. Laskin
Sepiapterin Reductase Mediates Chemical Redox Cycling in Lung Epithelial Cells
The Journal of Biological Chemistry, May 2013
Yu-Ching Su, Farshid Jalalvand, Matthias Mörgelin, Anna M. Blom, Birendra Singh, Kristian Riesbeck
Haemophilus influenzae acquires vitronectin via the ubiquitous Protein F to subvert host innate immunity
Molecular Microbiology, 2013
Magdalena Bartoszewska, Chris Williams, Alexey Kikhney, Lukasz Opaliński, Carlo W.T. van Roermund, Rinse de Boer, Marten Veenhuis and Ida J. van der Klei
Peroxisomal proteostasis involves a Lon family protein that functions as protease and chaperone
Genetics, 2013
US Patent, 2012
Dong Chen, Jason D Brown, Yukie Kawasaki, Jerry Bommer and Jon Y Takemoto
Scalable production of biliverdin IXα by Escherichia coli
BMC Biotechnology, 2012
Vadim Shchepachev, Harry Wischnewski, Edoardo Missiaglia, Charlotte Soneson, Claus M. Azzalin
Mpn1, Mutated in Poikiloderma with Neutropenia Protein 1, Is a Conserved 3′-to-5′ RNA Exonuclease Processing U6 Small Nuclear RNA
Cell Reports, 2012
Johanne Mørch Jensen, Fie C. Simonsen, Amir Mastali, Helle Hald, Ida Lillebro, Frederik Diness, Lars Olsen, Osman Mirza
Biophysical characterization of the proton-coupled oligopeptide transporter YjdL
Peptides, 2012
Journal of Experimental Botany, 2012
R Srivastava, M Aslam, SR Kalluri, L Schirmer, D Buck, B Tackenberg, V Rothhammer, A Chan, R Gold, A Berthele, JL Bennett, T Korn, and B Hemmer
Potassium Channel KIR4.1 as an Immune Target in Multiple Sclerosis
N Engl J Med, 2012
BC Yoon, H Jung, A Dwivedy, CM O’Hare, et al.
Local Translation of Extranuclear Lamin B Promotes Axon Maintenance
Cell, 2012
Environmental Microbiology Reports Volume 4, Issue 2, pages 194–202, April 2012
Anneli M. L. Edström Hägerwall, Victoria Rydengård, Per Fernlund, Matthias Mörgelin, Maria Baumgarten, Alexander M. Cole, Martin Malmsten, Birthe B. Kragelund, Ole E. Sørensen
Microseminoprotein Endows Post Coital Seminal Plasma with Potent Candidacidal Activity by a Calcium- and pH-Dependent Mechanism
PLoS Pathogens, April 2012
PROTEOMICS – Clinical Applications Volume 6, Issue 3-4, pages 182–189, April 2012
Girdhari M. Sharma, Andre Irsigler, Pushparani Dhanarajan, Rosalia Ayuso, Luda Bardina, Hugh A. Sampson, Kenneth H. Roux, and Shridhar K. Sathe
Cloning and Characterization of 2S Albumin, Car i 1, a Major Allergen in Pecan
J. Agric. Food Chem., 2011, 59
Stine N. Clemmensen, Lars C. Jacobsen, Sara Rørvig, Bjarke Askaa, Karin Christenson, Martin Iversen, Marianne H. Jørgensen, Maria T. Larsen, Bo van Deurs, Ole Østergaard, Niels H. Heegaard, Jack B. Cowland, Niels Borregaard
Alpha-1-antitrypsin is produced by human neutrophil granulocytes and their precursors and liberated during granule exocytosis
European Journal of Haematology, June 2011, vol. 86, Issue 6, pp. 517–530
Clinical Proteomics, 2011, 8:2
Karl Skoog, Filippa Stenberg Bruzell, Aurélie Ducroux, Mårten Hellberg, Henrik Johansson, Janne Lehtiö, Martin Högbom, Daniel O. Daley
Penicillin-binding protein 5 can form a homo-oligomeric complex in the inner membrane of Escherichia coli
Protein Science, September 2011, Vol. 20, Issue 9, pp 1520–1529
Linda Tancred, Maxim V. Telepnev, Igor Golovlev, Blanka Andersson, Henrik Andersson, Helena Lindgren and Anders Sjostedt
Administration of a donor of nitric oxide inhibits mglA expression of intracellular Francisella tularensis and counteracts phagosomal escape and subversion of TNF-alpha secretion
J Med Microbiol, June 2011
Girdhari M. Sharma, Andre Irsigler, Pushparani Dhanarajan, Rosalia Ayuso, Luda Bardina, Hugh A. Sampson, Kenneth H. Roux, and Shridhar K. Sathe
Cloning and Characterization of an 11S Legumin, Car i 4, a Major Allergen in Pecan
J. Agric. Food Chem., 2011, 59 (17), pp. 9542–9552
J. Med. Chem., 2011, 54 (16), pp. 5902–5914
Am J Physiol Cell Physiol, August 2011
Immunology, December 2011, Vol. 134, Issue 4, pp. 398–408
Bart W. Bardoel, Sjoerd van der Ent, Michiel J. C. Pel, Jan Tommassen, Corné M. J. Pieterse, Kok P. M. van Kessel, Jos A. G. van Strijp
Pseudomonas Evades Immune Recognition of Flagellin in Both Mammals and Plants
PLoS Pathog 7(8), August 2011
Virology, December 2011, Vol. 421, Issue 1, pp. 61-66
Simina Vintila, Tiago Selao, Agneta Norén, Birgitta Bergman, Rehab El-Shehawy
Characterization of nifH gene expression, modification and rearrangement in Nodularia spumigena strain AV1
FEMS Microbiology Ecology, 2011
Growth Hormone & IGF Research, Article in Press 2011
Louise Meinert Niclasen, Johan G. Olsen, Robert Dagil, Zhang Qing, Ole E Sørensen, Birthe B. Kragelund
Streptococcal pyrogenic exotoxin B (SpeB) boosts the contact system via binding of alpha-1 antitrypsin
Biochemical Journal, 2011, 434, 1 pp. 123-132
James M. Battisti, Linda D. Hicks and Michael F. Minnick
A unique Coxiella burnetii lipoprotein involved in metal binding (LimB)
Microbiology, 2011, vol. 157, pp. 966-976 ; DOI 10.1099/mic.0.046649-0
Biochemical and Biophysical Research Communications, July 2010, Vol. 398, Issue 3, pp. 525-531
van Noort, Johannes M., Bsibsi, Malika, Gerritsen, Wouter H., van der Valk, Paul, Bajramovic, Jeffrey J., Steinman, Lawrence, Amor, Sandra
[alpha]B-Crystallin Is a Target for Adaptive Immune Responses and a Trigger of Innate Responses in Preactive Multiple Sclerosis Lesions
Journal of Neuropathology & Experimental Neurology, July 2010, Vol. 69, Issue 7, pp. 694-703
Ricardo F Antunes, Cláudia Brandão, Margarida Maia and Fernando A Arosa
Red blood cells release factors with growth and survival bioactivities for normal and leukemic T cells
Immunology and Cell Biology, 2010
Molecular Microbiology, 2010, Vol. 75, Issue 3, pp. 676–691
Helicobacter, 2010, Vol. 15, Issue 5, pp. 430–437,
Holger Jon Møller, Marianne Jensby Nielsen, Maciej Bogdan Maniecki, Mette Madsen and Søren Kragh Moestrup
Soluble macrophage-derived CD163: A homogenous ectodomain protein with a dissociable haptoglobin–hemoglobin binding
Immunobiology, 2010, 215(5):406-12
Simina Vintilaa, Sara Jonassona, Henrik Wadenstenb, Anna Nilssonb, Per E. Andrénb and Rehab El-Shehawya
Proteomic profiling of the Baltic Sea cyanobacterium Nodularia spumigena strain AV1 during ammonium supplementation
Journal of Proteomics, August 2010, Vol. 73, Issue 9, pp. 1670-1679
Lene Udby, Anders H. Johnsen and Niels Borregaard
Human CRISP-3 binds serum a1B-glycoprotein across species
Biochimica et Biophysica Acta (BBA) – General Subjects, April 2010, Vol. 1800, Issue 4, pp. 481-485
J. Bacteriol, April 2010, 192(8), pp. 2077-84
Biochemistry, 2010, 49 (1), pp 58–67
Xiaole Wanga, Helle Halda, Heidi A. Ernsta, Jan Egebjerg, Kenneth V. Christensen, Michael Gajhedea, Jette S. Kastrupa and Osman Mirzaa
Over-expression, purification and characterization of an Asc-1 homologue from Gloeobacter violaceus
Protein Expression and Purification, June 2010, Vol. 71, Issue 2, pp. 179-183
Ian Gaël Rodrigue-Gervais, Hawley Rigsby, Loubna Jouan, Dominike Sauvé, Rafick-Pierre Sékaly, Bernard Willems, and Daniel Lamarre
Dendritic Cell Inhibition Is Connected to Exhaustion of CD8+ T Cell Polyfunctionality during Chronic Hepatitis C Virus Infection
The Journal of Immunology, 2010, 184
Endocrinology, doi:10.1210/en.2009-0960, This version published online on March 12, 2010
Juliane Kühn, Ariane Briegel, Erhard Mörschel, Jörg Kahnt, Katja Leser, Stephanie Wick, Grant J Jensen and Martin Thanbichler
Bactofilins, a ubiquitous class of cytoskeletal proteins mediating polar localization of a cell wall synthase in Caulobacter crescentus
The EMBO Journal, 2010, 29, pp. 327-339
Integr. Biol., 2009, 1, pp. 404-426
Kasper D. Berg, Raluca M. Tamas, Anne Riemann, Lise-Lotte Niels-Christiansen, Gert H. Hansen and E. Michael Danielsen
Caveolae in fibroblast-like synoviocytes: static structures associated with vimentin-based intermediate filaments
Histochem Cell Biol., 2009, 131, pp. 103–114
Björn Alriksson, Shaunita H. Rose, Willem H. van Zyl, Anders Sjöde, Nils-Olof Nilvebrant, and Leif J. Jönsson
Cellulase Production from Spent Lignocellulose Hydrolysates by Recombinant Aspergillus niger
Applied and Environmental Microbiology, April 2009, p. 2366-2374, Vol. 75, No. 8
David S. Gibsona, Sarah Blelocka, Jim Currya, Sorcha Finnegana, Adrienne Healya, Caitriona Scaifeb, Catherine McAllistera, Stephen Penningtonb, Michael Dunnb and Madeleine Rooneya
Comparative analysis of synovial fluid and plasma proteomes in juvenile arthritis – Proteomic patterns of joint inflammation in early stage disease
Journal of Proteomics, May 2009, Vol. 72, Issue 4, pp. 656-676
Sirpa Jylhäa, Soili Mäkinen-Kiljunenb, Tari Haahtelab, Hans Söderlunda, Kristiina Takkinena and Marja-Leena Laukkanena
Selection of recombinant IgE antibodies binding the ß-lactoglobulin allergen in a conformation-dependent manner
Journal of Immunological Methods, October 2009, Vol. 350, Issues 1-2, pp. 63-70
Ronggai Suna, Yasir A.W. Skeikya, Angelo Izzob, Veerabadran Dheenadhayalana, Zakaria Imama, Erica Penna, Katherine Staglianoa, Scott Haddocka, Stefanie Muellera, John Fulkersona, Charles Scangaa, Ajay Groverb, Steven C. Derrickc, Sheldon Morrisc, David M. Honea, Marcus A. Horwitze, Stefan H.E. Kaufmannd and Jerald C. Sadoffa
Novel recombinant BCG expressing perfringolysin O and the over-expression of key immunodominant antigens; pre-clinical characterization, safety and protection against challenge with Mycobacterium tuberculosis
Vaccine, July 2009, Vol. 27, Issue 33, pp. 4412
Morten A. Nielsen, Vera V. Pinto, Mafalda Resende, Madeleine Dahlbäck, Sisse B. Ditlev, Thor G. Theander, and Ali Salanti
Induction of Adhesion-Inhibitory Antibodies against Placental Plasmodium falciparum Parasites by Using Single Domains of VAR2CSA
Infection and Immunity, June 2009, Vol. 77, No. 6, pp. 2482-2487
Proteomics, 2009, Vol. 9, Issue 5, pp. 1230-1240
F. Kutlara, L.M. Hilliardb, L. Zhuanga, N. Patela, B. Erogluc, S.E. Meilerd, H. Carmichaela, R.B. Russelle and A. Kutlara
Hb M Dothan [ß 25/26 (B7/B8)/(GGT/GAG?GAG//Gly/Glu?Glu]; a new mechanism of unstable methemoglobin variant and molecular characteristics
Blood Cells, Molecules, and Diseases, November-December 2009, Vol. 43, Issue 3, Pp. 235-238
Martha Kampp Thomsen, Gert H. Hansen, Michael Danielsen
Galectin-2 at the enterocyte brush border of the small intestine
Molecular Membrane Biology, July 2009, Vol. 26, Issue 5, pp. 347-355
David S. Gibson, Sorcha Finnegan, Grant Jordan, Caitriona Scaife, Simon Brockbank, Jim Curry, Catherine McAllister, Stephen Pennington, Michael Dunn and Madeleine E. Rooney
Stratification and Monitoring of Juvenile Idiopathic Arthritis Patients by Synovial Proteome Analysis
J. Proteome Res., 2009, 8 (12), p. 5601
Caries Research, 2009, Vol. 43, No. 3
Journal of Bacteriology, September 2008, p. 5934
Biotechnology, 2008; 45(3-4) pp. 323-35.
Anneli M. L. Edström, Johan Malm, Birgitta Frohm, Julie A. Martellini, Aleksander Giwercman, Matthias Mörgelin, Alexander M. Cole, and Ole E. Sørensen
The Major Bactericidal Activity of Human Seminal Plasma Is Zinc-Dependent and Derived from Fragmentation of the Semenogelins1
The Journal of Immunology, 2008, 181: pp. 3413-3421
Marta Cotado-Sampayoa, Pilar Okenve Ramosa, Rubén Ortega Pereza, Mukti Ojhab and François Barjaa,
Specificity of commercial anti-spectrin antibody in the study of fungal and Oomycete spectrin: Cross-reaction with proteins other than spectrin
Fungal Genetics and Biology, June 2008, Vol. 45, Issue 6, pp. 1008-1015
Sørensen HP, Jacobsen J, Nielbo S, Poulsen FM, Wewer UM.
Expression, purification and insights into structure and folding of the ADAM22 pro domain.
Protein Expr Purif., October 2008, 61(2):175-83. Epub 2008 Jun 13.
Song T, Mika F, Lindmark B, Liu Z, Schild S, Bishop A, Zhu J, Camilli A, Johansson J, Vogel J, Wai SN.
A new Vibrio cholerae sRNA modulates colonization and affects release of outer membrane vesicles.
Mol Microbiol., October 2008; 70(1):pp. 100-11. Epub 2008 Aug 4.
Journal of Bacteriology, June 2008, pp. 3817-3823
Søren Kjærulff, Nicoline Resen Andersen, Mia Trolle Borup, and Olaf Nielsen
Cdk phosphorylation of the Ste11 transcription factor constrains differentiation-specific transcription to G1
Genes & Dev., 2007, 21: pp. 347-359
Uta Wrackmeyer, Gert H. Hansen, Tsukasa Seya, and E. Michael Danielsen
Intelectin: A Novel Lipid Raft-Associated Protein in the Enterocyte Brush Border
Biochemistry, 2006, 45 (30), pp.
Gert H. Hansen, Esben D. K. Pedersen, Lissi Immerdal, Lise-Lotte Niels-Christiansen, and E. Michael Danielsen
Anti-glycosyl antibodies in lipid rafts of the enterocyte brush border: a possible host defense against pathogens
Am J Physiol Gastrointest Liver Physiol 289 (2005), 1100-1107
Jan Platenik, Vladimir J. Balcar, Yukio Yoneda, Barbara Mioduszewska, Richard Buchal,Radovan Hynek, Lukasz Kilianek, Nobuyuki Kuramoto, Grzegorz ilczynski, Kiyokazu Ogita, Yoichi Nakamura, Leszek Kaczmarek
Apparent presence of Ser133-phosphorylated cyclic AMP response element binding protein (pCREB) in brain mitochondria is due to cross-reactivity of pCREB antibodies with pyruvate dehydrogenase.
Journal of Neurochemistry, 95, (2005), 1446–1460

Protein Identification in proteomics experiments from 2D SDS PAGE gels

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Corinna Richter, Oindrilla Mukherjee, David Ermert, Birendra Singh, Yu-Ching Su, Vaibhav Agarwal, Anna M. Blom & Kristian Riesbeck
Moonlighting of Helicobacter pylori catalase protects against complement-mediated killing by utilising the host molecule vitronectin
Nature, Scientific Reports 6, Article number: 24391, April 2016
Proteome Science, 5, (2007), p.5-5
Kidney Int. 2006 Apr;69(8):1333-40.
Phillip Henschke, Henrik Vorum, Bent Honoré, and Gregory Edward Rice
Protein profiling the effects of in vitro hyperoxic exposure on fetal rabbit lung
Proteomics, 6, (2006), 1957-1962
Applied and Environmental Microbiology, 72, (2006), 1173-1179
Jes Lindholt, Jette Støvring, Lars Østergaard, Sigitas Urbonavicius, Eskild Henneberg, Bent Honoré, Henrik Vorum
Serum Antibodies Against Chlamydia pneumoniae Outer Membrane Protein Cross-React With the Heavy Chain of Immunoglobulin in the Wall of Abdominal Aortic Aneurysms
Circulation 109, (2004) 2097-2102
Bent Honoré, Henrik Vorum, Anders Elm Pedersen, Søren Buus, and Mogens H. Claesson
Changes in protein expression in p53 deleted spontaneous thymic lymphomas
Experimental Cell Research 295 (2004) 91– 101

Protein Identification from Immunoprecipitation and 1D SDS PAGE gels

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Martina Bielaszewska, Christian Rüter, Andreas Bauwens, Lilo Greune, Kevin-André Jarosch, Daniel Steil, Wenlan Zhang, Xiaohua He, Roland Lloubes, Angelika Fruth, Kwang Sik Kim, M. Alexander Schmidt, Ulrich Dobrindt, Alexander Mellmann, Helge Karch
Host cell interactions of outer membrane vesicle-associated virulence factors of enterohemorrhagic Escherichia coli O157: Intracellular delivery, trafficking and mechanisms of cell injury
PLOS Pathogens, February 2017
Developmental & Comparative Immunology, 6, (2007), 618-631
Biochem Biophys Res Commun. 2007 Feb 23;353(4):1063-7. Epub 2006 Dec 27.

N-terminal Sequencing

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Barbara Grünwalda, Jennifer Vandoorenb, Erica Locatellic, Pierre Fitenb, Ghislain Opdenakkerb, Paul Proostb, Achim Krügera, Jean Paul Lellouched, Liron Limor Israeld, Louis Shenkmane, Mauro Comes Franchinic
Matrix metalloproteinase-9 (MMP-9) as an activator of nanosystems for targeted drug delivery in pancreatic cancer
Journal of Controlled Release, Volume 239, Pages 39–48, 10 October 2016
TP Schmidt, AM Perna, T Fugmann, M Böhm, J Hiss, S Haller, C Götz, N Tegtmeyer, B Hoy, TT Rau, D Neri, S Backert, G Schneider, and S Wesslerb
Identification of E-cadherin signature motifs functioning as cleavage sites for Helicobacter pylori HtrA
Sci Rep. 2016; 6: 23264. , March 2016
Martina Andberg, Hannu Maaheimo, Esa-Pekka Kumpula, Harry Boer, Mervi Toivari, Merja Penttilä, Anu Koivula
Characterization of a unique Caulobacter crescentus aldose-aldose oxidoreductase having dual activities
Applied Microbiology and Biotechnology, Volume 100, Issue 2, pp 673-685, January 2016
DAC Stapels, A Kuipers, M von Köckritz-Blickwede, M Ruyken, AT Tromp, MJ Horsburgh, CJC de Haas, JAG van Strijp1, KPM van Kessel, and SHM Rooijakkers
Staphylococcus aureus protects its immune-evasion proteins against degradation by neutrophil serine proteases
Cellular Microbiology, October 2015
Massimiliano Biagini, Manuela Garibaldi, Susanna Aprea, Alfredo Pezzicoli, Francesco Doro, Marco Becherelli, Anna Rita Taddei, Chiara Tani, Simona Tavarini, Marirosa Mora, Giuseppe Teti, Ugo D’Oro, Sandra Nuti, Marco Soriani, Immaculada Margarit, Rino Rappuoli, Guido Grandi and Nathalie Norais
The human pathogen Streptococcus pyogenes releases lipoproteins as Lipoprotein-rich Membrane Vesicles
The American Society for Biochemistry and Molecular Biology, May 2015
Anne Sofie Molsted Wanschera, Michael Williamsonb, Tasja Wainani Ebersoleb, Werner Streichera, Mats Wikströma, Giuseppe Cazzamalib
Production of functional human insulin-like growth factor binding proteins (IGFBPs) using recombinant expression in HEK293 cells
Protein Expression and Purification Volume 108, Pages 97–105, April 2015
Vladimir Majerciaka, Natalia Pripuzovaa, Calvin Chana, Nicholas Temkina, Suzanne I. Spechtb and Zhi-Ming Zhenga
Stability of structured Kaposi sarcoma-associated herpesvirus ORF57 protein is regulated by protein phosphorylation and homodimerization
Journal of Virology, January 2015
Saeid Karkehabadi, Kate E. Helmich, Thijs Kaper, Henrik Hansson, Nils Egil Mikkelsen, Mikael Gudmundsson, Kathleen Piens, Meredith Fujdala, Goutami Banerjee, John S. Scott-Craig, Jonathan D. Walton, George N. Phillips Jr. and Mats Sandgren
Biochemical Characterization and Crystal Structures of a Fungal Family 3 β-Glucosidase, Cel3A from Hypocrea jecorina
The Journal of Biological Chemistry, August 2014
Yong Xue, Ajay A. Vashisht, Yuliang Tan, Trent Su, James A. Wohlschlegel
PRB1 Is Required for Clipping of the Histone H3 N Terminal Tail in Saccharomyces cerevisiae
PLOS one, February 2014
Inês R. Silva, Carsten Jers, Harm Otten, Christian Nyffenegger, Dorte M. Larsen, Patrick M. F. Derkx, Anne S. Meyer, Jørn D. Mikkelsen, Sine Larsen
Design of thermostable rhamnogalacturonan lyase mutants from Bacillus licheniformis by combination of targeted single point mutations
Applied Microbiology and Biotechnology, January 2014
Elena Del Tordello, Irene Vacca, Sanjay Ramb, Rino Rappuoli, Davide Serruto
Neisseria meningitidis NalP cleaves human complement C3, facilitating degradation of C3b and survival in human serum
PNAS, December 2013
Valeria Cafardi, Massimiliano Biagini, Manuele Martinelli, Rosanna Leuzzi, Jeffrey T. Rubino, Francesca Cantini, Nathalie Norais, Maria Scarselli, Davide Serruto, Meera Unnikrishnan
Identification of a Novel Zinc Metalloprotease through a Global Analysis of Clostridium difficile Extracellular Proteins
PLoS ONE, November 2013
Kenneth Matthew Scaglione, Venkatesha Basrur, Naila S. Ashraf, John R. Konen, Kojo S. J. Elenitoba-Johnson, Sokol V. Todi, Henry L. Paulson
The ubiquitin conjugating enzyme (E2) Ube2w ubiquitinates the N-terminus of substrates
The Journal of Biological Chemistry, May 2013
Mattias C. U. Gustafsson, Jonas Lannergård, O. Rickard Nilsson, Bodil M. Kristensen, John E. Olsen, Claire L. Harris, Rafael L. Ufret-Vincenty, Margaretha Stålhammar-Carlemalm, Gunnar Lindahl
Factor H Binds to the Hypervariable Region of Many Streptococcus pyogenes M Proteins but Does Not Promote Phagocytosis Resistance or Acute Virulence
PLoS Pathogens, April 2013
Shawon Gupta, Monika Braun, Nicole D. Tischler, Malin Stoltz, Karin B. Sundström, Niklas K. Björkström, Hans-Gustaf Ljunggren, Jonas Klingström
Hantavirus-infection Confers Resistance to Cytotoxic Lymphocyte-Mediated Apoptosis
PloS Pathogens, 2013
Sigurbjörg Rutardottir, E.J. Charlotta Nilsson, Jan Pallon, Magnus Gram and Bo Åkerström
The cysteine 34 residue of A1M/1-microglobulin is essential for protection of irradiated cell cultures and reduction of carbonyl groups
Free Radical Research, 47(6-7) , January 2013
Robert Dagil, Charlotte O’Shea, Anders Nykjaer, Alexandre M. J. J. Bonvin and Birthe B. Kragelund
Gentamicin Binds to Megalin as a Competitive Inhibitor Using the Common Ligand Binding Motif of Complement Type Repeats
The Journal of Biological Chemistry, 2012
Maxim Salganik, Balasubramanian Venkatakrishnan, Antonette Bennett, Bridget Lins, Joseph Yarbrough, Nicholas Muzyczka, Mavis Agbandje-McKenna and Robert McKenna
Evidence for pH Dependent Protease Activity in the Adeno-associated Virus Capsid
Journal of Virology, 2012
Alexander J Laarman, Gerdien Mijnheer, Joe M Mootz, Willemien J M van Rooijen, Maartje Ruyken, Cheryl L Malone, Erik C Heezius, Richard Ward, Graeme Milligan, Jos A G van Strijp, Carla J C de Haas, Alexander R Horswill, Kok P M van Kessel and Suzan H M Rooijakkers
Staphylococcus aureus Staphopain A inhibits CXCR2-dependent neutrophil activation and chemotaxis
The EMBO Journal, 2012
Applied and Environmental Microbiology, 2012
The Journal of Immunology, November 30, 2011 1102162
Alexander J. Laarman, Maartje Ruyken, Cheryl L. Malone, Jos A. G. van Strijp, Alexander R. Horswill and Suzan H. M. Rooijakkers
Staphylococcus aureus Metalloprotease Aureolysin Cleaves Complement C3 To Mediate Immune Evasion
The Journal of Immunology April 18, 2011 1002948
Elizabeth C Murphy1, Matthias Morgelin, Jakki C Cooney and Inga-Maria Frick
Interaction of Bacteroides spp. with the kallikrein-kinin system
Microbiology April 2011
Quang T. Le, Hae-Ki Min, Han-Zhang Xia, Yoshihiro Fukuoka, Nobuhiko Katunuma and Lawrence B. Schwartz
Promiscuous Processing of Human α/β-Protryptases by Cathepsins L, B, and C
The Journal of Immunology May 11, 2011 1001804
The Journal of Biological Chemistry June 27, 2011
Mona Dvir-Ginzberg, Viktoria Gagarina, Eun Jin Lee, Richard Booth, Odile Gabay, David J. Hall
TNFα-mediated cleavage and inactivation of SirT1 in human osteoarthritic chondrocytes
Arthritis & Rheumatism – Article in Press (2011
Virginie Roussel-Jazédé, Patrick Van Gelder, Robert Sijbrandi, Lucy Rutten, Ben R. Otto, Joen Luirink, Piet Gros, Jan Tommassen, & Peter Van Ulsen
Channel properties of the translocator domain of the autotransporter Hbp of Escherichia coli
Molecular Membrane Biology April 2011, Vol. 28, No. 3 , Pages 158-170 (doi:10.3109/09687688.2010.550328)
Mariana Wahjudi, Evelina Papaioannou, Oktavia Hendrawati, Aart HG van Assen, Ronald van Merkerk, Robbert H Cool, Gerrit J Poelarends and Wim J Quax
PA0305 of Pseudomonas aeruginosa is a quorum quenching acyl homoserine lactone acylase belonging to the Ntn hydrolase superfamily
Microbiology (2011), DOI 10.1099/mic.0.043935-0
Alexander J. Laarman, Maartje Ruyken, Cheryl L. Malone, Jos A. G. van Strijp, Alexander R. Horswill and Suzan H. M. Rooijakkers
Staphylococcus aureus Metalloprotease Aureolysin Cleaves Complement C3 To Mediate Immune Evasion
The Journal of Immunology, April 18, 2011 1002948
Joachim R. de Miranda, Benjamin Dainat, Barbara Locke, Guido Cordoni, Helène Berthoud, Laurent Gauthier, Peter Neumann, Giles E. Budge, Brenda V. Ball and Don B. Stoltz
Genetic characterization of slow bee paralysis virus of the honeybee (Apis mellifera L.)
J Gen Virol 2010 91 (2010), 2524-2530
Ding Chen, Lei Lei, Chunxie Lu, Rhonda Flores, Matthew DeLisa, Tucker C. Roberts, Floyd E. Romesberg and Guangming Zhong
Secretion of the Chlamydial Virulence Factor CPAF Requires Sec-Dependent Pathway
Microbiology 2010, 156:3031.
Biochemistry, 2009, 48 (42), pp 10056–10065
Thao Trana, Philippe Büscherc, Guy Vandenbussched, Lode Wynsa, Joris Messensa and Henri De Grevea
Heterologous expression, purification and characterisation of the extracellular domain of trypanosome invariant surface glycoprotein ISG75
Journal of Biotechnology, Volume 135, Issue 3, 30 June 2008, Pages 247-254
Christian D. S. Nelson, Eveliina Minkkinen, Magnus Bergkvist, Karin Hoelzer, Mathew Fisher, Brian Bothner, and Colin R. Parrish
Detecting Small Changes and Additional Peptides in the Canine Parvovirus Capsid Structure
J Virol. 2008 Nov;82(21):10397-407 Epub 2008 Aug 13.
Acta Cryst. (2008). F64, 707-710
J. Biol. Chem., Vol. 283, Issue 40, 26879-26885, October 3, 2008
Timothy L. Bullock, Annia Rodríguez-Hernández, Eleonora M. Corigliano, and John J. Perona
A rationally engineered misacylating aminoacyl-tRNA synthetase
PNAS, May 27, (2008), vol. 105, no. 21, 7428-7433
Biochem Biophys Res Commun. 2008 Mar 21;367(4):888-92. Epub 2008 Jan 9.

Amino Acid Analysis

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Protein Expression and Purification, Volume 134, Pages 72–81, June 2017
S. Donadio-Andréi, K. Chikh, C. Heuclin, E. Kuczewski, A. Charrié, A. Gauchez, C. Ronin
Variability among TSH Measurements Can Be Reduced by Combining a Glycoengineered Calibrator to Epitope-Defined Immunoassays
European Thyroid Journal, December 2016
Maryam Hassan, Dag Anders Brede, Dzung B. Diep, Ingolf F. Nes, Farzaneh Lotfipour, Zoya Hojabri
Efficient Inactivation of Multi-Antibiotics Resistant Nosocomial Enterococci by Purified Hiracin Bacteriocin
Advanced Pharmaceutical Bulletin 5(3), 393-401, September 2015
Tanya Jelacic, Donald Chabot, Joel Bozue, Steven Tobery, Michael West, Krishna Moody, De Yang, Joost Oppenheim, Arthur Friedlander
Exposure to Bacillus anthracis capsule results in suppression of human monocyte-derived dendritic cells
American Society for Microbiology, June 2014
Katrine Pilely Hansen, Mikkel-Ole Skjoedt, Christian Nielsen, Thomas Emil Andersen, Anne Åbom, Lars Vitved, Claus Koch, Karsten Skjødt, Yaseelan Palarasah
A specific assay for quantification of human C4c by use of an anti-C4c monoclonal antibody
Journal of Immunological Methods, January 2014
Helle Wulf-Johansson, Sofie Lock Johansson, Anders Schlosser, Anne Trommelholt Holm, Lars Melholt Rasmussen, Hans Mickley, Axel C. P. Diederichsen, Henrik Munkholm, Tina Svenstrup Poulsen, Ida Tornøe, Vicki Nielsen, Niels Marcussen, Jørgen Vestbo, Susanne Gjørup Sækmose, Uffe Holmskov, Grith Lykke Sorensen
Localization of Microfibrillar-Associated Protein 4 (MFAP4) in Human Tissues: Clinical Evaluation of Serum MFAP4 and Its Association with Various Cardiovascular Conditions
PLoS ONE, December 2013
Thor C. Møller, Volker F. Wirth, Nina I. Roberts, Julia Bender, Anders Bach, Birgitte P. S. Jacky, Kristian Strømgaard, Jan M. Deussing, Thue W. Schwartz, Karen L. Martinez
PDZ Domain-Mediated Interactions of G Protein-Coupled Receptors with Postsynaptic Density Protein 95: Quantitative Characterization of Interactions
PLoS ONE, May 2013
Joshua A. Gustafson, Robert A. Price, Jordan Frandsen, Corinne R. Henak, Joseph Cappello, and Hamidreza Ghandehari
Synthesis and Characterization of a Matrix-Metalloproteinase Responsive Silk–Elastinlike Protein Polymer
Biomacromolecules, 2013
Alexander McPherson, Steven B. Larson, and Yurii G. Kuznetsov
Tyrosine Microcrystals Produced by Digestion of Proteins with Pancreatic Enzymes
Cryst. Growth Des., 2012
BMC Biotechnology 2009, 9:76
Ana R. Cabrera, Kevin V. Donohue, Sayed M.S. Khalila, Daniel E. Sonenshinec and R. Michael Roe
Characterization of vitellin protein in the twospotted spider mite, Tetranychus urticae
Journal of Insect Physiology, Volume 55, Issue 7, July 2009, Pages 655-661
Anders Bach, Celestine N. Chi, Thomas B. Olsen, Søren W. Pedersen, Martin U. Røder, Gar F. Pang, Rasmus P. Clausen, Per Jemth and Kristian Strømgaard
Modified Peptides as Potent Inhibitors of the Postsynaptic Density-95/N-Methyl-d-Aspartate Receptor Interaction
J. Med. Chem., 2008, 51 (20), pp 6450–6459

Intact Mass - Molecular Weight Determination

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Zhirong Fu, Michael Thorpe, Rahel Alemayehu, Ananya Roy, Jukka Kervinen, Lawrence de Garavilla, Magnus Åbrink and Lars Hellman
Highly Selective Cleavage of Cytokines and Chemokines by the Human Mast Cell Chymase and Neutrophil Cathepsin G
J Immunol, January 2017, 1601223

Protein Sequencing

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Verena Richter, Marcel Kwiatkowski, Maryam Omidi, Azam Omidi, Wesley D Robertson, Hartmut Schlüter
Mass spectrometric analysis of protein species of biologics
Pharmaceutical Bioprocessing, October 2013, vol. 1, No. 4, pp.381-404
Robert W. Phelan, Matthieu Barret, Paul D. Cotter, Paula M. O’Connor, Rui Chen, John P. Morrissey, Alan D. W. Dobson, Fergal O’Gara, Teresa M. Barbosa
Subtilomycin: A New Lantibiotic from Bacillus subtilis Strain MMA7 Isolated from the Marine Sponge Haliclona simulans
Marine Drugs, 2013, vol. 11, pp.1878-1898

Antibody Characterization

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Karina Juhl Rasmussena, Mikkel-Ole Skjoedtb, Lars Vitveda, Karsten Skjoedta, Yaseelan Palarasahc
A novel antihuman C3d monoclonal antibody with specificity to the C3d complement split product
Journal of Immunological Methods Volume 444, May 2017, Pages 51–55

GPMAW lite

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International Journal of Food Science & Technology, November 2016

Patent Applications

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FPO IP Research and Communities, June 2016
FPO IP Research and Communities, June 2016
Y Ilan, Y Shaaltiel, U Hanania, T Kizhner, T Ariel, S Gingis-velitski
USE OF PLANT CELLS EXPRESSING A TNFalpha POLYPEPTIDE INHIBITOR IN THERAPY
FPO IP Research and Communities, January 2016
FPO IP Research and Communities, January 2016
FPO IP Research and Communities, January 2016
Claus Henrik Nielsen, Dres Damgaard
ANTI-PAD2 ANTIBODIES AND TREATMENT OF AUTOIMMUNE DISEASES
FPO IP Research and Communities, December 2015
Holger Jon Møller, Sidsel Rødgaard-hansen
NOVEL DISEASE-MARKER
FPO IP Research and Communities, December 2015
Luc G. Berthiaume, Conganige Maneka Anne Perinpanayagam, Chuiyee Yap, Erwan Beauchamp, Erwan
SYNTHETIC LETHALITY AND THE TREATMENT OF CANCER
FPO IP Research and Communities, October 2015
H Ghandehari, J Cappello, J Frandsen, J Gustafson, K Greish, RA Price
MATRIX METALLOPROTEINASE CLEAVABLE PROTEIN POLYMERS FOR CANCER GENE THERAPY
FPO IP Research and Communities, June 2015
Xuanyong Lu, Timothy M. Block
SERINE PROTEASE INHIBITOR KAZAL ANTIBODIES
FPO IP Research and Communities, October 2014
JG Moe, E Davidowitz, P Lopez
TAU PROTEASE COMPOSITIONS AND METHODS OF USE
FPO IP Research and Communities, September 2014
JD Watkins, YJ Buechler, C Wu, M Do, AP Vasserot, JD Mendlein
PEGYLATED TYROSYL-TRNA SYNTHETASE POLYPEPTIDES
FPO IP Research and Communities, September 2014
FPO IP Research and Communities, March 2014
Hamidreza Ghandehari, Joseph Cappello, Jordan Frandsen, Joshua Gustafson, Khaled Gerish, Robert Andrew PriceHemmer Bernhard, Rajneesh Srivastava
Matrix Metalloproteinase Cleavable Protein Polymers for Cancer Gene Therapy
FPO IP Research and Communities, December 2013
FPO IP Research and Communities, August 2013
Lorand Szabo, Zsolt Molnar, Attila Laszlo Nemeth
Fungal Proteases
FPO IP Research and Communities, April 2013
Jeffry D. Watkins, Ying Ji Buechler, Chi-Fang Wu, Minh-Ha Do, Alain P. Vasserot, John D. Mendlein
Pegylated Tyrosyl-TRNA Synthetase Polypeptides
FPO IP Research and Communities, February 2013
James G. Moe, Eliot J. Davidowitz, Patricia Lopez
Tau Protease Compositions and Methods of Use
FPO IP Research and Communities, November 2012
Ish Kumar Dhawan, Dipnath Baidyaroy, Andrew Shaw, Oleh Tanchek, Christopher Hill, Chengson Liu, Amala Chokshi, Brian R. Scott
Compositions and Methods for Production of Fermentable Sugars
FPO IP Research and Communities, October 2012
Xuanyong Lu, Timothy M. Block
Serine Protease Inhibitor Kazal Antibodies
FPO IP Research and Communities, June 2012
Peter C. Romaine, Zhixin Shi, Donald S. Walters, Jack Q. Wilkinson
Regulatory Element for Heterologous Protein Production in the Fruiting Body of Filamentous Fungi
European Patent Office, March 2012
FPO IP Research and Communities, July 2011
Hans Ramlov, Casper Wilkens, Anders Lobner-olesen
Polypeptides Compromising an Ice-Binding Activity
FPO IP Research and Communities, December 2010
Bart Willem Bardoel, Sjoerd Van Der Ent, Cornelis Marinus Jozef Pieterse, Cornelis Petrus Maria Van Kessel, Johannes Antonius Gerardus Van Strijp
Use of Pseudomonas Aeruginosa Alkaline Protease (APRA) and Inhibitors Thereof in Medicine and Agriculture
FPO IP Research and Communities, August 2009
Gary Gilkeson, Stephen Tomlinson, Michael V. Holers, Baerbel
Targeting Complement Factor H for Treatment of Diseases
FPO IP Research and Communities, September 2008
Børge Windel Kringelum, Niels Martin Sørensen, Christel Garrigues, Martin B Pedersen, Susanne Grøn
Use of Compounds Involved in Biosynthesis of Nucleic Acids to Increase Yield of Bacterial Cultures
FPO IP Research and Communities, July 2008