My Alphalyse

Cart

Antibody disulfide bonds analysis

  • The number of disulfide bridges and free sulfhydryl groups
  • The position of disulfide bridges in both non-reduced and reduced protein
  • Combine with other analytical services
order this analysis
Let's work together
Contact us to start a collaboration.
 knowledge center
Knowledge center
Technical details, sample info, experts etc.

Map the disulfide bridges in biopharmaceutical proteins and mAbs

Problems with protein stability and activity often correlate with an abnormal pattern of disulfide bonds. For many proteins and mAbs, disulfide bridges are essential for optimal biologic function.

Thus, the ICH Q6B Guidelines require an analysis of the disulfide bonds for biopharmaceutical proteins and antibodies. It includes determinations of the number and ...

Map the disulfide bridges in biopharmaceutical proteins and mAbs

Problems with protein stability and activity often correlate with an abnormal pattern of disulfide bonds. For many proteins and mAbs, disulfide bridges are essential for optimal biologic function.

Thus, the ICH Q6B Guidelines require an analysis of the disulfide bonds for biopharmaceutical proteins and antibodies. It includes determinations of the number and positions of free sulfhydryl-groups and disulfide bridges.

Our disulfide bridge analysis includes:

Part 1: Determination of the number of disulfide bonds and free sulfhydryl groups

  • Determination of the exact molecular weight (MW) of the native protein by UV-LC ESI-MS. Analysis of non-reduced protein with intact disulfide bonds
  • Determination of the exact molecular weight of reduced protein by UV-LC ESI-MS
  • Calculate the number of both disulfide bridges and free thiol groups

Part 2: Position of disulfide bonds determined by non-reduced and reduced protein

  • Digestion of non-reduced protein/antibody using 2-4 enzymes followed by peptide mapping
  • Digest the reduced protein/antibody with 2-4 enzymes.
  • Compiling data in a detailed report

We analyze under conditions that keep scrambling effects to a minimum. 

Not exactly what you need? Please send us a request so we can adjust the analysis to meet your specific needs.

MoreLess details

The process:

  • 1 Contact us to discuss your project and receive a project proposal
  • 2 We determine the number and position of disulfide bonds and free sulfhydryl groups
  • 3 You receive a report with a clear presentation of the findings
  • 4 Follow-up by phone or email

Learn more:

Let's work together

We offer customized solutions, contact us to discuss your project.

Ask a question or get a quote

Send us a description of your project and we shall be happy to present you with a solution.

  • Max. file size: 10 MB.
  • This field is for validation purposes and should be left unchanged.

Start with an online meeting

We encourage you to call us or schedule a meeting to discuss your project in detail.

Set up meeting

Direct phone numbers

Testimonials

  • "With the results from the extensive characterization, we identified a scale-up problem and could optimize the process to increase mAb stability."

    Combining mass spec analyses for mAb characterization and batch-to-batch comparison

    Explore customer case

  • "Not only do we gain access to their hands, but we also get to pick their brains for mass spectrometry knowledge."

    Protein characterization for optimization of manufacturing processes.

    Explore customer case

  • "We are very pleased Alphalyses high-quality antibody characterization services. We ship hundreds of samples and always receive the analytic results shortly after."

    High-throughput characterization analysis of antibodies for fast quality assessment

    Explore customer case

Knowledge center

More information

We would like to help you as much as possible with your project and therefore provide several kinds of customer support:

Download & links

Learn more in this video and blog posts:

Technical details

Introduction to disulfide bridge mapping

Mass spectrometry analysis is very useful for characterizing disulfide bridges in biopharmaceutical proteins and mAb. You can use it both under reducing and non-reducing conditions. At Alphalyse, we combine the results from intact mass analysis with peptide mapping, using one or more proteases.

Antibody disulfide bonds Analysis procedure

Intact mass:
We use a Bruker Q-TOF Impact instrument to analyze the protein/antibody. We thus analyze both by direct injection of a reduced and a non-reduced sample. The raw data is smoothed and de-convoluted using the MaxEnt algorithm.

Peptide mapping:
Our analysts first digest the protein/antibody sample in two different ways; one half without reduction and the other half after reduction. An Agilent 1200 system then separates the peptide samples. The system is connected to a high-resolution Q-Tof mass spectrometer (Bruker Maxis Impact). It runs in Data Dependent Analysis mode (DDA) and switches between MS and MS/MS mode. Finally, we search the MS/MS data against a FASTA database with sequences of the protein/antibody using MassAI software.

Report:

The final report includes a comparison of the intact mass data. We thus use this comparison to determine the total number of bridges in the protein/antibody. We also include a table with information about all identified disulfide-bridged peptides, including the relative quantity of each. Potentially scrambled disulfide bonds are also considered.

Disulfide bridge mapping of mAb

Identification of disulfide bridges in protein

Molecular weight determination of antibody

Identification of disulfide bridges in monoclonal antibody

Sample preparation

Sample requirements for disulfide bonds analysis

mAb characterization by mass spectrometry requires a pure sample in sufficient amounts to obtain good data. It is thus essential that samples are prepared in a clean laboratory to avoid contamination with human keratin.

Samples can be submitted in liquid or lyophilized.

  1. Purify the protein/antibody

    1. The chromatographic protein/antibody purity should be >90%.
    2. Avoid detergents and keep buffer concentration at a minimum. LC-ESI MS can often be done on samples containing small amounts of salts, urea, or detergent. However, you obtain the best result with low buffer strength in volatile solvents without detergents.
    3. Minimum amount ~ 0.5 mg.

  2. Put the protein/antibody sample into a microcentrifuge tube

    1. Use an Eppendorf Safe Lock tube or similar tubes from your lab.
    2. Lyophilize or speed vac the protein/antibody to a solid sample to ensure stability during shipment.
    3. Alternatively, freeze or refrigerate to +4 oC for cold shipment of the liquid sample.
Related services

You can combine this analysis with other characterization analyses such as:

Meet the experts

For this type of analysis our experts include:

Do you need help?
Li Peng Lundgren

PhD in Protein Chemistry

Explore
Do you need help?
Stine Thyssen

PhD in Health Science

Explore
Improve your protein research
Subscribe to our newsletter and get 3 tips that will instantly improve your protein analysis results

Receive monthly emails with news, tips, case stories
and offers for protein analysis
© Copyright Alphalyse 2002 - 2022. All rights reserved.